Dcp2 1-300
Protein Sequence
Sequence Variants
| ID | Name | Remain region | Mutation sites | Ref seq |
|---|---|---|---|---|
| psp00734 | Dcp2 | 1-970 | - | ✓ |
| psp03639 | Dcp2 1-300 | 1-300 | - | |
| psp02213 | Dcp2 301-970 | 301-970 | - |
Orthologs and Paralogs
| ID | Name | Organism | Length |
|---|---|---|---|
| psp02269 | LSm14A | Homo sapiens | 463 |
| psp04468 | DCP1 | Drosophila melanogaster | 372 |
| psp01629 | DCP5 | Chlamydomonas reinhardtii | 423 |
| psp01454 | DCP5 | Solanum lycopersicum | 566 |
| psp02829 | PAB8 | Arabidopsis thaliana | 671 |
| psp01232 | AT4G34110 | Arabidopsis thaliana | 629 |
| psp03575 | DCP2 | Homo sapiens | 420 |
| psp05123 | DCP5 | Physcomitrium patens | 666 |
| psp00274 | DCP1 | Arabidopsis thaliana | 367 |
| psp03994 | DCP5 | Oryza sativa | 690 |
| psp01966 | AT2G23350 | Arabidopsis thaliana | 662 |
| psp04617 | DCP5 | Arabidopsis thaliana | 611 |
| psp00565 | RAP55 | Xenopus laevis | 471 |
| psp01140 | Scd6p | Saccharomyces cerevisiae | 349 |
| psp04576 | DCP1A | Homo sapiens | 582 |
| psp01851 | Dcp1 | Saccharomyces cerevisiae | 231 |
| psp00282 | DCP5 ICS (scrambled 1#) | Arabidopsis thaliana | 210 |
| psp01190 | DCP5 ICS (scrambled 3#) | Arabidopsis thaliana | 210 |
| psp01992 | DCP5 ICS (scrambled 2#) | Arabidopsis thaliana | 210 |
| psp00389 | DCP5 IDR123 | Arabidopsis thaliana | 209 |
| psp01114 | DCP5 ΔN | Arabidopsis thaliana | 523 |
| psp01683 | DCP5 ΔPrLD2 | Arabidopsis thaliana | 563 |
| psp02489 | DCP5 ΔIDR123 | Arabidopsis thaliana | 399 |
| psp02854 | DCP5 ΔC | Arabidopsis thaliana | 458 |
| psp03221 | DCP5 ΔIDR1234 | Arabidopsis thaliana | 338 |
| psp03888 | DCP5 ICS (CR deleted) | Arabidopsis thaliana | 194 |
| psp03942 | DCP5 ΔPrD | Arabidopsis thaliana | 480 |
| psp04267 | DCP5 ΔIDR12 | Arabidopsis thaliana | 462 |
| psp04505 | DCP5 ΔIDR1 | Arabidopsis thaliana | 547 |
| psp04675 | DCP5 ΔIDR | Arabidopsis thaliana | 248 |
| psp04760 | DCP5 ΔIDR45 | Arabidopsis thaliana | 459 |
| psp00594 | DCP5 ICS 23 (L to N) | Arabidopsis thaliana | 209 |
| psp00684 | DCP5 ICS (F-Y) | Arabidopsis thaliana | 210 |
| psp00923 | DCP5 ICS 23 (L to A) | Arabidopsis thaliana | 210 |
| psp01522 | DCP5 ICS 23 (L to D) | Arabidopsis thaliana | 210 |
| psp02856 | DCP5 ICS 12 (L to N) | Arabidopsis thaliana | 210 |
| psp03249 | DCP5 ICS 6 (L to N) | Arabidopsis thaliana | 210 |
| psp03977 | DCP5 ICS (YW-S) | Arabidopsis thaliana | 210 |
| psp04763 | DCP5 ICS (CR substituted) | Arabidopsis thaliana | 210 |
| psp04871 | DCP5 ICS 10 (N to L) | Arabidopsis thaliana | 209 |
| psp00891 | DCP1A (CTD) | Homo sapiens | 202 |
| psp03215 | DCP1A (NTD) | Homo sapiens | 380 |
| psp01072 | Dcp1 Δ82-129 | Saccharomyces cerevisiae | 183 |
Biophysical Features
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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.
Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.
PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.
LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.
NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.
Polarity was computated by ProtScale, please refer to: ProtScale.
SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.
Protein Structure
Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.
For pLDDT, please refer to: pLDDT: Understanding local confidence