CBX2 1-498
Protein Sequence
Sequence Variants
| ID | Name | Remain region | Mutation sites | Ref seq |
|---|---|---|---|---|
| psp02218 | CBX2 | 1-532 | - | ✓ |
| psp04877 | CBX2 1-498 | 1-498 | - | |
| psp01419 | CBX2 89-532 | 89-532 | - | |
| psp01902 | CBX2 1-281 | 1-281 | - | |
| psp03798 | CBX2 65-532 | 65-532 | - | |
| psp03909 | CBX2 1-192 | 1-192 | - | |
| psp00653 | CBX2AT-P2A | - | K74A, R75A, R79A, R81A, K82A | |
| psp00844 | CBX2 ATLm | - | P134A, R135A, G136A | |
| psp03189 | CBX2 Atm | - | P76A, R77A, G78A | |
| psp03868 | CBX2 SRR-S2A | - | S106A, S108A, S110A, S112A, T114A, S115A, S117A, S119A, S120A | |
| psp03878 | CBX2 HNCR-N2A | - | D121A, E122A, E123A, D124A, D125A | |
| psp04441 | CBX2 SRR-S2E | - | S106E, S108E, S110E, S112E, T114E, S115E, S117E, S119E, S120E | |
| psp04852 | CBX2 CA-P2A | - | R161A, K162A, K163A, R164A, R166A, K167A |
Orthologs and Paralogs
| ID | Name | Organism | Length |
|---|---|---|---|
| psp01759 | CBX4 | Homo sapiens | 560 |
| psp01385 | CBX7A | Mus musculus | 251 |
| psp04631 | CBX8 | Mus musculus | 362 |
| psp04145 | CBX2 | Mus musculus | 519 |
| psp02386 | CBX4-CBox-IIITD mut | Homo sapiens | 560 |
| psp02921 | CBX4-CBox-FKEY mut | Homo sapiens | 560 |
| psp04203 | CBX4-CBox-VTV mut | Homo sapiens | 560 |
| psp04434 | CBX4-CBox-LTVT mut | Homo sapiens | 560 |
| psp00181 | CBX4-dCD (del 1-60) | Homo sapiens | 500 |
| psp00455 | CBX4-dP2 (del 61-269) | Homo sapiens | 351 |
| psp01070 | CBX4-dP3 (del 270-530) | Homo sapiens | 299 |
| psp01233 | CBX4-dCBox (del 531-560) | Homo sapiens | 530 |
| psp00491 | CBX2 SRR | Mus musculus | 519 |
| psp00663 | CBX2 ATHL2 | Mus musculus | 519 |
| psp00695 | CBX2 ATH | Mus musculus | 519 |
| psp01534 | CBX2 F12A | Mus musculus | 519 |
| psp04432 | CBX2 ATHL1 | Mus musculus | 519 |
| psp02482 | CBX2 ΔCD | Mus musculus | 454 |
| psp04288 | CBX2 ΔCD-ATH | Mus musculus | 431 |
| psp02211 | CBX7C | Mus musculus | 166 |
Biophysical Features
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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.
Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.
PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.
LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.
NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.
Polarity was computated by ProtScale, please refer to: ProtScale.
SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.
Protein Structure
Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.
For pLDDT, please refer to: pLDDT: Understanding local confidence