TDRD1

Synonyms: Tudor domain-containing protein 1, tdrd1

ID psp04659
Organism Danio rerio
Length 1175
Source UniProt: Q58EK5

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
39029469 - Positive

Protein Sequence

Sequence Variants

No protein variants available for this protein.

Orthologs and Paralogs

ID Name Organism Length
psp00674 Vret Drosophila melanogaster 642
psp03691 Kots Drosophila melanogaster 892
psp03502 TDRD1 Homo sapiens 1180
psp04009 TDRD1 Xenopus tropicalis 1162
psp00260 TDRD1 Gallus gallus 1035
psp01007 TDRD1 Alligator sinensis 1165
psp03075 TDRD1 Mus musculus 1172
psp02999 Veneno Drosophila melanogaster 691
psp02867 DmVeneno+mouse TDRD1 CTD synthetic 751
psp03821 DmVret+mouse TDRD1 CTD synthetic 702
psp03905 DmKots+mouse TDRD1 CTD synthetic 952
psp00168 TDRD1-3GS (1149-1154 GSGSGS) Mus musculus 1172
psp01799 TDRD-1 GS-1 Mus musculus 1172
psp02107 TDRD-1 GS-2 Mus musculus 1172
psp02123 TDRD1 I1149E Mus musculus 1172
psp02349 TDRD1 Y554L&Y774L Mus musculus 1172
psp02760 TDRD1 Y774L Mus musculus 1172
psp02995 TDRD1-6A Mus musculus 1172
psp03449 TDRD1 F1152E Mus musculus 1172
psp03519 TDRD-1 GS-3 Mus musculus 1172
psp04316 TDRD1 L1154E Mus musculus 1172
psp04620 TDRD1 L1153E Mus musculus 1172
psp04699 TDRD1 L1150E Mus musculus 1172
psp05103 TDRD1 L1151E Mus musculus 1172
psp05180 TDRD1 Y554L Mus musculus 1172
psp00095 TDRD1 ΔTD2 Mus musculus 957
psp00145 TDRD1-ΔNTD Mus musculus 1043
psp00388 TDRD1 TD2+CTD Mus musculus 313
psp00593 TDRD1 1-1140 Mus musculus 1140
psp01499 TDRD1 ΔTD Mus musculus 290
psp01533 TDRD1 ΔTD1 Mus musculus 962
psp01955 TDRD1 1-1155 Mus musculus 1155
psp02053 TDRD1-ΔIDR Mus musculus 942
psp02145 TDRD1 TD1+CTD Mus musculus 323
psp02221 TDRD1 ΔTD4 Mus musculus 974
psp02362 TDRD1 ΔTD3 Mus musculus 971
psp02808 TDRD1 1-1160 Mus musculus 1160
psp03096 TDRD1 1-1145 Mus musculus 1145
psp04394 TDRD1 TD4+CTD Mus musculus 267
psp04405 TDRD1 1-1150 Mus musculus 1150
psp04809 TDRD1 TD3+CTD Mus musculus 318
psp05013 TDRD TD234+CTD Mus musculus 712
psp05097 TDRD TD34+CTD Mus musculus 492

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence