SEUSS Δhelices

ID psp04064
Organism Arabidopsis thaliana
Length 828

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
36376475 - Negative

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp01641 SEUSS 1-877 - ✓
psp04064 SEUSS Δhelices 1-222, 272-877 -
psp00200 SEUSS ΔIDR1+helices 223-272, 301-877 -
psp00207 SEUSS ∆IDR1 301-877 -
psp00228 SEUSS 151-300 151-300 -
psp00404 SEUSS 151-200 151-200 -
psp00858 SEUSS 51-100 51-100 -
psp00935 SEUSS 101-200 101-200 -
psp01065 SEUSS IDR2 570-877 -
psp01095 SEUSS IDR1 1-300 -
psp01524 SEUSS 1-50 1-50 -
psp01846 SEUSS 101-150 101-150 -
psp02294 SEUSS 1-100 1-100 -
psp02359 SEUSS 1-150 1-150 -
psp02859 SEUSS 201-300 201-300 -
psp03232 SEUSS 251-300 251-300 -
psp03266 SEUSS ∆IDR2 1-569 -
psp03362 SEUSS LDB 301-569 -
psp05129 SEUSS 201-250 201-250 -

Orthologs and Paralogs

ID Name Organism Length
psp02662 TaSEU Triticum aestivum 934
psp02475 Ssn6 Schizosaccharomyces pombe 1102
psp01664 MpSEU Marchantia polymorpha 1002
psp00255 SbSEU Sorghum bicolor 927
psp04253 OsSEU Oryza sativa 933
psp04445 ZmSEU Zea mays 916
psp04848 CrSEU Capsella rubella 886
psp04855 BrSEU Brassica rapa 774

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence