SbSEU

ID psp00255
Organism Sorghum bicolor
Length 927

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
36376475 - Positive

Protein Sequence

Sequence Variants

No protein variants available for this protein.

Orthologs and Paralogs

ID Name Organism Length
psp02662 TaSEU Triticum aestivum 934
psp01641 SEUSS Arabidopsis thaliana 877
psp02475 Ssn6 Schizosaccharomyces pombe 1102
psp01664 MpSEU Marchantia polymorpha 1002
psp04253 OsSEU Oryza sativa 933
psp04445 ZmSEU Zea mays 916
psp04848 CrSEU Capsella rubella 886
psp04855 BrSEU Brassica rapa 774
psp00200 SEUSS ΔIDR1+helices Arabidopsis thaliana 627
psp00207 SEUSS ∆IDR1 Arabidopsis thaliana 577
psp00228 SEUSS 151-300 Arabidopsis thaliana 150
psp00404 SEUSS 151-200 Arabidopsis thaliana 50
psp00858 SEUSS 51-100 Arabidopsis thaliana 50
psp00935 SEUSS 101-200 Arabidopsis thaliana 100
psp01065 SEUSS IDR2 Arabidopsis thaliana 308
psp01095 SEUSS IDR1 Arabidopsis thaliana 300
psp01524 SEUSS 1-50 Arabidopsis thaliana 50
psp01846 SEUSS 101-150 Arabidopsis thaliana 50
psp02294 SEUSS 1-100 Arabidopsis thaliana 100
psp02359 SEUSS 1-150 Arabidopsis thaliana 150
psp02859 SEUSS 201-300 Arabidopsis thaliana 100
psp03232 SEUSS 251-300 Arabidopsis thaliana 50
psp03266 SEUSS ∆IDR2 Arabidopsis thaliana 569
psp03362 SEUSS LDB Arabidopsis thaliana 269
psp04064 SEUSS Δhelices Arabidopsis thaliana 828
psp05129 SEUSS 201-250 Arabidopsis thaliana 50

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence