AtNBR1 ΔPB1

ID psp02072
Organism Arabidopsis thaliana
Length 618

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
39162855 - Negative

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp03180 AtNBR1 1-704 - ✓
psp02072 AtNBR1 ΔPB1 1-6, 93-704 -
psp00763 AtNBR1 ΔZZ 1-285, 337-704 -
psp01286 AtNBR1 ΔZZ ΔFW 1-283, 486-704 -
psp02180 AtNBR1 ΔFW 1-371, 487-704 -
psp03571 AtNBR1 ΔUBA ΔZZ ΔFW 487-704 -
psp03949 AtNBR1 [WDPI661-664AAAA] - W661A, D662A, P663A, I664A

Orthologs and Paralogs

ID Name Organism Length
psp00250 NBR1 Homo sapiens 966
psp00116 NBR1 Mus musculus 988
psp04242 NBR1 D50R Mus musculus 988

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence