HOXD4 IDR (AroPLUS)

ID psp01345
Organism Homo sapiens
Length 140

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
38969762 Positive -

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp01316 HOXD4 1-255 -
psp01345 HOXD4 IDR (AroPLUS) 1-140 P69Y, G77Y, G83Y, A98Y, A105Y, Q120Y, L127Y
psp01986 HOXD4 IDR 1-140 -
psp00194 HOXD4 IDR (AroLITE S) 1-140 Y6S, Y12S, F17S, Y23S, Y28S, Y36S, Y37S, F46S, Y52S, F57S, F62S, Y89S, Y113S, Y134S, W136S
psp00996 HOXD4 IDR (AroLITE A) 1-140 Y6A, Y12A, F17A, Y23A, Y28A, Y36A, Y37A, F46A, Y52A, F57A, F62A, Y89A, Y113A, Y134A, W136A
psp02788 HOXD4 IDR (AroPLUS LITE) 1-140 P69A, G77A, G83A, Q120A, L127A
psp03372 HOXD4 IDR (AroLITE G) 1-140 Y6G, Y12G, F17G, Y23G, Y28G, Y36G, Y37G, F46G, Y52G, F57G, F62G, Y89G, Y113G, Y134G, W136G
psp00642 HOXD4 IDR (AroPLUS patched) - -
psp01094 HOXD4 IDR (AroPERFECT) - -
psp04082 HOXD4 IDR (AroPLUS patched LITE) - -

Orthologs and Paralogs

ID Name Organism Length
psp02961 HOXA1 Homo sapiens 335
psp04832 HOXB Homo sapiens 53
psp02240 HOXA1 ΔH Homo sapiens 325
psp00365 HOXA13(+7A) IDR Homo sapiens 206
psp02208 HOXA13 IDR (1-199) Homo sapiens 199
psp05042 HOXB1 IDR Homo sapiens 200
psp02246 HOXB1 IDR (AroLITE A) Homo sapiens 200
psp03026 HOXB8 Homo sapiens 243
psp04850 HOXB8-IDR Homo sapiens 131
psp00338 HOXC4 IDR (AroLITE S) Homo sapiens 153
psp03644 HOXC4 IDR Homo sapiens 153
psp04137 HOXC4 IDR (AroPERFECT) Homo sapiens 153
psp00048 HOXD13 Homo sapiens 343
psp00667 HOXD13(-7A) IDR Homo sapiens 110
psp01742 HOXD13(-15A) IDR Homo sapiens 103
psp01910 HOXD13(+9A) IDR Homo sapiens 127
psp01937 HOXD13(DEdel) IDR Homo sapiens 112
psp02643 HOXD13(+7A) IDR Homo sapiens 125
psp03704 HOXD13(+10A) IDR Homo sapiens 128
psp03720 HOXD13(+8A) IDR Homo sapiens 126
psp04924 HOXD13(+14A) IDR Homo sapiens 132
psp03717 HOXD13 IDR (1-118) Homo sapiens 118

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence