DDX21 IDR E/D to A
Protein Sequence
Sequence Variants
| ID | Name | Remain region | Mutation sites | Ref seq |
|---|---|---|---|---|
| psp01508 | DDX21 | 1-783 | - | ✓ |
| psp04991 | DDX21 IDR E/D to A | - | D8A, E12A, D14A, E21A, E28A, E29A, E31A, E34A, D39A, E42A, E43A, E46A, E47A, E48A, E49A, E63A, E66A, D68A, E81A, E82A, D87A, E100A, E103A, E118A, E119A, E122A, E123A, E124A, D126A, E136A, E138A, E142A, E145A, E158A, D160A, E165A, E169A, E170A, E174A, E176A, E178A, E182A |
Orthologs and Paralogs
| ID | Name | Organism | Length |
|---|---|---|---|
| psp03739 | DDX3X | Mus musculus | 662 |
| psp04883 | DDX3X | Homo sapiens | 662 |
| psp00447 | DDX3Y | Homo sapiens | 660 |
| psp01873 | DDX5 | Nothobranchius furzeri | 634 |
| psp03900 | DDX5 | Homo sapiens | 614 |
| psp02126 | DDX10 | Homo sapiens | 875 |
| psp02900 | DDX6 | Homo sapiens | 483 |
| psp04916 | DDX18 | Homo sapiens | 670 |
| psp02903 | Ddx3xb | Danio rerio | 688 |
| psp03844 | Ddx4 | Homo sapiens | 724 |
| psp05164 | Ddx21-CIDR (zebrafish) | Danio rerio | 791 |
| psp01093 | DDX-19 | Caenorhabditis elegans | 1022 |
| psp01451 | DDX21 MUT-IDR | Synthetic | 783 |
| psp02598 | Ddx3xb△N-YAP IDR | Danio rerio | 702 |
| psp02679 | Ddx3xb△N-hnRNPA1 IDR | Danio rerio | 619 |
| psp04063 | Ddx3xb△N-FUS IDR | Danio rerio | 813 |
| psp00778 | Ddx3xb△N (△45-211) | Danio rerio | 521 |
| psp04256 | Ddx3xb△C (△608-688) | Danio rerio | 607 |
| psp02715 | DDX18 (ΔCIDR) | Homo sapiens | 553 |
| psp03913 | DDX18 (ΔNIDR) | Homo sapiens | 494 |
| psp04235 | DDX18 (ΔIDR) | Homo sapiens | 447 |
| psp00317 | DDX4 IDR-FOXA1 | Synthetic | 541 |
| psp00665 | Ddx4-CFP1 | Homo sapiens | 522 |
| psp00816 | DDX4-GFP(1-251+GFP+675-724) | Homo sapiens | 540 |
| psp02494 | DDX4 IDR-ARID1A | Homo sapiens | 1575 |
| psp02750 | Ddx4-NOX | Synthetic | 440 |
| psp04646 | DDX4-TPPP CORE | Synthetic | 359 |
| psp04810 | Ddx4n1 | Homo sapiens | 242 |
| psp02001 | DDX4 1-270 | Homo sapiens | 270 |
| psp04919 | Ddx4N1 (1-236) | Homo sapiens | 236 |
| psp01933 | DDX6 (p.Thr391Ile) | Homo sapiens | 483 |
| psp02243 | DDX6 (p.Arg373Gln) | Homo sapiens | 483 |
| psp02997 | DDX6 (p.Cys390Arg) | Homo sapiens | 483 |
| psp04045 | DDX6 (p.Thr391Pro) | Homo sapiens | 483 |
| psp04243 | DDX6 (p.His372Arg) | Homo sapiens | 483 |
| psp03974 | DDX5 ΔIDR (1-483) | Nothobranchius furzeri | 483 |
| psp04698 | DDX5 ΔPrD (1-535) | Nothobranchius furzeri | 535 |
| psp03106 | DDX3x allR | Mus musculus | 662 |
| psp03630 | DDX3X K118Q | Mus musculus | 662 |
| psp04041 | DDX3X allQ | Mus musculus | 662 |
| psp04293 | DDX3X K118R | Mus musculus | 662 |
| psp01085 | DDX3X-IDR1 (2-167) | Mus musculus | 166 |
| psp00758 | DDX3X-IDR1 K118Q (2-167) | Mus musculus | 166 |
| psp02197 | DDX3X-IDR1 allQ (2-167) | Mus musculus | 166 |
| psp04471 | DDX3X-IDR1 K118R (2-167) | Mus musculus | 166 |
Biophysical Features
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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.
Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.
PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.
LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.
NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.
Polarity was computated by ProtScale, please refer to: ProtScale.
SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.
Protein Structure
Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.
For pLDDT, please refer to: pLDDT: Understanding local confidence