ECT1 ΔPrLD

ID psp04973
Organism Arabidopsis thaliana
Length 313

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
38041863 - Positive

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp03680 ECT1 1-428 - ✓
psp04973 ECT1 ΔPrLD 1-33, 149-428 -
psp01012 ECT1 ΔYTH 1-243, 383-428 -

Orthologs and Paralogs

ID Name Organism Length
psp02626 ECT9 Arabidopsis thaliana 539
psp00531 ECT6 Arabidopsis thaliana 595
psp04335 ECT12 Arabidopsis thaliana 444
psp03295 ECT7 Arabidopsis thaliana 639
psp00912 ECT11 Arabidopsis thaliana 470
psp03037 AT5G58190 Arabidopsis thaliana 528
psp03015 ECT2 Arabidopsis thaliana 667
psp01369 ECT3 Arabidopsis thaliana 495
psp00507 ECT8 Arabidopsis thaliana 528
psp03177 ECT5 Arabidopsis thaliana 634
psp03911 ECT4 Arabidopsis thaliana 605

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence