CRY2 ΔN538-R557

ID psp04841
Organism Arabidopsis thaliana
Length 592

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
36514885 - Positive

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp04530 CRY2 1-612 - ✓
psp04841 CRY2 ΔN538-R557 1-537, 558-612 -
psp03511 CRY2 1-509 1-509 -
psp03535 CRY2 510-612 510-612 -
psp03876 CRY2 1-489 1-489 -
psp04354 CRY2 490-612 490-612 -
psp00093 CRY2 M5-A - T514A, I515A, K516A, E517A, P518A, G519A
psp00327 CRY2 M18-A - G594A, I595A, Q596A, D597A, S598A, S599A
psp00407 CRY2 M19-A - D600A, Q601A, I602A, T603A, T604A, S605A
psp00497 CRY2 M6-A - L520A, C521A, P522A, S523A, V524A, S525A
psp00639 CRY2 M16-A - S582A, C583A, S584A, L585A, S587A
psp00749 CRY2 M2-A - G496A, P499A, D500A, E501A
psp00802 CRY2 M7-A - S526A, N527A, D528A, Q529A, Q530A, V531A
psp01530 CRY2 M1-A - E490A, Q492A, I493A, M494A, I495A
psp01647 CRY2 M11-A - R551A, D552A, M553A, K554A, K555A, S556A
psp01914 CRY2 M13-A - E563A, L564A, F565A, S566A, T567A
psp02478 CRY2 M15-A - V576A, F577A, F578A, V579A, S580A, Q581A
psp02512 CRY2 M9-A - N538A, G539A, S540A, K541A, R542A, V543A
psp02629 CRY2 M8-A - P532A, S533A, V535A, R536A, Y537A
psp03036 CRY2 M4-A - E508A, L510A, G511A, N513A
psp03220 CRY2 M14-A - E569A, S570A, S571A, S572A, S573A, S574A, S575A
psp03849 CRY2 M17-A - E588A, G589A, K590A, N591A, L592A, E593A
psp04090 CRY2 M20-A - L606A, G607A, K608A, N609A, G610A, C611A, K612A
psp04284 CRY2 M10-A - K544A, P545A, E546A, E547A, E548A, E549A, E550A
psp04448 CRY2 M12-A - R557A, G558A, F559A, D560A, E561A, R562A
psp04969 CRY2 M3-A - I502A, V503A, D505A, S506A, F507A

Orthologs and Paralogs

No orthologs or paralogs found for this protein in the database.

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence