ATG8e IDR

ID psp04452
Organism Arabidopsis thaliana
Length 30

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
36546085 Positive -

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp00309 ATG8e 1-122 - ✓
psp04452 ATG8e IDR 9-38 -
psp03069 ATG8e ΔIDR 1-8, 39-122 -

Orthologs and Paralogs

ID Name Organism Length
psp03607 ATG8h Arabidopsis thaliana 119
psp01521 ATG8b Arabidopsis thaliana 122
psp00007 ATG8i Arabidopsis thaliana 115
psp00668 ATG4B Homo sapiens 393
psp02525 Atg11 Saccharomyces cerevisiae 1178
psp00622 ATG8a Arabidopsis thaliana 122
psp03107 ATG8d Arabidopsis thaliana 120
psp01384 ATG8f Arabidopsis thaliana 121
psp02886 ATG3 Arabidopsis thaliana 313
psp00112 ATG8c Arabidopsis thaliana 119
psp02458 ATG8g Arabidopsis thaliana 121
psp00719 ATG4B(Δ191-305) Homo sapiens 278

Biophysical Features

The chart can zoom in and zoom out by mouse wheel.

IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence