Rpb1 CTD

ID psp04387
Organism Saccharomyces cerevisiae
Length 215

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
36070379 Positive -

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp01259 Rpb1 1-1733 -
psp04387 Rpb1 CTD 1518-1639, 1641-1733 -
psp03763 RPB1 CTD 1542-1733 -

Orthologs and Paralogs

ID Name Organism Length
psp05061 Rpb7 Saccharomyces cerevisiae 171
psp04228 Rpb4 Saccharomyces cerevisiae 221
psp00492 Rpb1 CTD Naganishia vishniacii 246
psp00556 Rpb1 CTD Hortaea werneckii 220
psp01705 Rpb1 CTD Dioszegia cryoxerica 216
psp01844 RPB1 CTD Homo sapiens 378
psp03310 Rpb1 CTD Drosophila melanogaster 309
psp03747 Rpb1 CTD Aureobasidium pullulans 205
psp04892 Rpb1 CTD Wallemia ichthyophaga 218

Biophysical Features

The chart can zoom in and zoom out by mouse wheel.

IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence