MATR3 ΔRRM2 (Δ496-571)

ID psp04057
Organism Mus musculus
Length 770

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
37381832 - Positive

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp00225 MATR3 1-846 - ✓
psp04057 MATR3 ΔRRM2 (Δ496-571) 1-495, 572-846 -

Orthologs and Paralogs

ID Name Organism Length
psp01673 MATR3 Homo sapiens 847
psp00603 MATR3 (S85C) Homo sapiens 847
psp00808 MATR3:T622A Homo sapiens 847
psp02671 MATR3:P154S Homo sapiens 847
psp03395 MATR3:F115C Homo sapiens 847
psp00832 N397-MATR3 Homo sapiens 397
psp02096 MATR3 ΔNLS (Δ588-595) Homo sapiens 839
psp02251 MATR3(576-847) Homo sapiens 272
psp03183 MATR3(398-847) Homo sapiens 450
psp03444 MATR3(398-595) Homo sapiens 198
psp03651 MATR3 ΔRRM2 (Δ496-575) Homo sapiens 767
psp03951 MATR3 ΔRRM1 (Δ398-473) Homo sapiens 771
psp04382 MATR3 ΔRRM1/2 (Δ398-473 and Δ496-575) Homo sapiens 691
psp04813 MATR3(1-575) Homo sapiens 575
psp02314 N397-MATR3-P154S Homo sapiens 397
psp02659 N397-MATR3-F115C Homo sapiens 397
psp03552 N397-MATR3-S85C Homo sapiens 397

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence