NPR1 S11/15D

ID psp02839
Organism Arabidopsis thaliana
Length 593

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
32810437 - Negative

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp02021 NPR1 1-593 - ✓
psp02839 NPR1 S11/15D - S11D, S15D
psp01237 NPR1 ANK 230-360 -
psp01470 NPR1 ∆BTB 211-593 -
psp02154 NPR1 BTB 1-210 -
psp04497 NPR1 CTD 341-593 -
psp04596 NPR1 ∆CTD 1-364 -
psp00716 NPR1 S55/59D - S55D, S59D
psp01077 NPR1 C216A - C216A
psp01127 NPR1 S55/59A - S55A, S59A
psp03274 NPR1 C156A - C156A
psp04458 NPR1 S11/15A - S11A, S15A
psp04912 NPR1 C82A - C82A

Orthologs and Paralogs

ID Name Organism Length
psp00333 NPR5 Arabidopsis thaliana 491
psp02407 NPR2 Arabidopsis thaliana 600
psp00677 NPR4 Arabidopsis thaliana 574
psp04755 NPR3 Arabidopsis thaliana 586
psp01561 NPR6 Arabidopsis thaliana 467

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence