GST-RAP80

ID psp02130
Organism Synthetic
Length 937

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
37638744 Positive -

Protein Sequence

Sequence Variants

No protein variants available for this protein.

Orthologs and Paralogs

ID Name Organism Length
psp01661 GST-yCTD Saccharomyces cerevisiae 410
psp02366 GST-YFP-CBX2 Mus musculus 976
psp03058 GST-CBX2 Mus musculus 737
psp03726 GST-G3BP1 Synthetic 684
psp00431 GST Synthetic 218
psp02539 GST-RNF168 IDR1-mEGFP Synthetic 663
psp02927 GST-RNF168 IDR2-mEGFP Synthetic 684
psp02762 GST-TACC3 Synthetic 1056
psp00291 GST-TACC Synthetic 463
psp01676 GST-TACC3 ΔTACC Synthetic 811
psp00061 GST-PHF13 Homo sapiens 518
psp00286 RAP80 Homo sapiens 719
psp00158 RAP80 IDR1 Homo sapiens 254
psp01712 RAP80 IDR2 Homo sapiens 188
psp03120 RAP80 IDR3 Homo sapiens 133
psp05173 RAP80 ΔIDR1 Homo sapiens 465

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence