STAU1 ΔRBD23

ID psp01819
Organism Homo sapiens
Length 378

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
38913026 Positive -

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp01584 STAU1 1-577 - ✓
psp01819 STAU1 ΔRBD23 1-70, 270-577 -
psp01921 STAU1 RBD23 70-270 -
psp03094 STAU1 RBD2 70-180 -
psp03151 STAU1 1-180 1-180 -
psp03940 STAU1 RBD3 182-270 -
psp03987 STAU1 RBD45 280-577 -
psp04020 STAU1 RBD2345 70-577 -
psp04112 STAU1 ΔRBD3 1-181, 270-577 -
psp04349 STAU1 ΔRBD2 1-68, 179-577 -
psp00189 STAU1 5KE - K86E, K87E, K266E, K267E, K268E
psp03114 STAU1 K266-268E - K266E, K267E, K268E
psp04717 STAU1 K86,87E - K86E, K87E

Orthologs and Paralogs

No orthologs or paralogs found for this protein in the database.

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence