WTAP (250-396)

ID psp01028
Organism Homo sapiens
Length 147

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
40424294 Positive -

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp03967 WTAP 1-396 - ✓
psp01028 WTAP (250-396) 250-396 -
psp01110 WTAP (1-249) 1-249 -
psp00251 WTAP 1S-D-1 - S288D
psp00875 WTAP 1S-D-2 - S306D
psp01101 WTAP 2ST-D - S353D, T356D
psp01639 WTAP 5ST-D - S288D, S306D, S333D, S353D, T356D
psp01781 WTAP 4ST-D-2 - S306D, S333D, S353D, T356D
psp02134 WTAP 5ST-A - S288A, S306A, S333A, S353A, T356A
psp04498 WTAP 4ST-D-1 - S288D, S333D, S353D, T356D
psp04795 WTAP 3ST-D - S333D, S353D, T356D

Orthologs and Paralogs

No orthologs or paralogs found for this protein in the database.

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence