LSD1 Disordered

ID psp00986
Organism Arabidopsis thaliana
Length 57

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
40686090 Negative -

Protein Sequence

Sequence Variants

ID Name Remain region Mutation sites Ref seq
psp04313 LSD1 1-184 - ✓
psp00986 LSD1 Disordered 128-184 -
psp00127 LSD1 Zinc Finger-3 94-127 -
psp00278 LSD1 Zinc Finger-2 47-93 -
psp02837 LSD1 Zinc Finger-1 1-46 -

Orthologs and Paralogs

ID Name Organism Length
psp01427 LSD1 IDR (1-191) Homo sapiens 191

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence