LplA Y11A
Protein Sequence
Sequence Variants
| ID | Name | Remain region | Mutation sites | Ref seq |
|---|---|---|---|---|
| psp01049 | LplA | 1-337 | - | ✓ |
| psp00050 | LplA Y11A | - | Y11A | |
| psp00018 | LplA Q309A | - | Q309A | |
| psp00149 | LplA D12K | - | D12K | |
| psp00232 | LplA Q298A | - | Q298A | |
| psp00276 | LplA R25E | - | R25E | |
| psp00339 | LplA E233K | - | E233K | |
| psp00398 | LplA W52A | - | W52A | |
| psp00682 | LplA R47E | - | R47E | |
| psp01088 | LplA R66E | - | R66E | |
| psp01275 | LplA E21K | - | E21K | |
| psp01570 | LplA W243A | - | W243A | |
| psp01789 | LplA R303K | - | R303K | |
| psp02122 | LplA F235A | - | F235A | |
| psp02147 | LplA R58E | - | R58E | |
| psp02261 | LplA E320K | - | E320K | |
| psp02392 | LplA D317K | - | D317K | |
| psp02658 | LplA E322K | - | E322K | |
| psp02824 | LplA Q308A | - | Q308A | |
| psp02869 | LplA R237E | - | R237E | |
| psp02911 | LplA E291K | - | E291K | |
| psp03104 | LplA E61K | - | E61K | |
| psp03331 | LplA W241A | - | W241A | |
| psp03503 | LplA E62K | - | E62K | |
| psp03660 | LplA D41K | - | D41K | |
| psp03673 | LplA D9K | - | D9K | |
| psp03802 | LplA R277E | - | R277E | |
| psp03975 | LplA E242K | - | E242K | |
| psp04134 | LplA W14A | - | W14A | |
| psp04182 | LplA R140E | - | R140E | |
| psp04339 | LplA H274A | - | H274A | |
| psp04351 | LplA R296K | - | R296K | |
| psp04956 | LplA K143E | - | K143E |
Orthologs and Paralogs
Biophysical Features
The chart can zoom in and zoom out by mouse wheel.
IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.
Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.
PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.
LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.
NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.
Polarity was computated by ProtScale, please refer to: ProtScale.
SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.
Protein Structure
Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.
For pLDDT, please refer to: pLDDT: Understanding local confidence