SRRM1

Synonyms: SRm160, SRRM1, Ser/Arg-related nuclear matrix protein, SR-related nuclear matrix protein of 160 kDa, SRM160, Serine/arginine repetitive matrix protein 1

ID psp04478
Organism Homo sapiens
Length 904
Source UniProt: Q8IYB3

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
29973724 - Positive

Protein Sequence

Sequence Variants

No protein variants available for this protein.

Orthologs and Paralogs

ID Name Organism Length
psp01733 SRRM2 Homo sapiens 2752
psp00801 SRRM2-IDR hnRNPA1 Homo sapiens 1756
psp04066 SRRM2-IDR TDP-43 Homo sapiens 1774
psp04219 SRRM2-IDR NPM1-FUS Homo sapiens 1997
psp04712 SRRM2-IDR FUS Homo sapiens 1847
psp01153 SRRM2 UPR3 Homo sapiens 33
psp01548 SRRM2-IDR Homo sapiens 1120
psp01642 SRRM2-ΔIDR Homo sapiens 1632
psp01930 SRRM2 KSR Homo sapiens 61
psp01228 SRRM2-IDR S-D Homo sapiens 1120
psp01704 SRRM2-IDR D shuffle Homo sapiens 1120
psp01713 SRRM2-IDR RKH-Q Homo sapiens 1120
psp03236 SRRM2-IDR S-A Homo sapiens 1120

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence