NOP56

Synonyms: NOP56, NOL5A, Nucleolar protein 5A, Nucleolar protein 56

ID psp03482
Organism Homo sapiens
Length 594
Source UniProt: O00567

PS Record in Articles

Reference (Pubmed ID) In vitro results In vivo results
35864335 - Positive

Protein Sequence

Sequence Variants

No protein variants available for this protein.

Orthologs and Paralogs

ID Name Organism Length
psp03787 NOP53 Homo sapiens 478
psp00211 NOP53 66-200 Homo sapiens 135
psp00395 NOP53 450-476 Homo sapiens 27
psp01133 NOP53 343-478 Homo sapiens 136
psp01148 NOP53-IDR1 (1-200) Homo sapiens 200
psp01225 NOP53 26-57 Homo sapiens 32
psp02000 NOP53 90-117 Homo sapiens 28
psp02636 NOP53-Rm-del(41-159) Homo sapiens 359
psp02944 NOP53 1-140 Homo sapiens 140
psp03289 NOP53 1-60+141-200 Homo sapiens 120
psp03436 NOP53 201-342 Homo sapiens 142
psp05047 NOP53-Rm (41-159) Homo sapiens 119

Biophysical Features

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IDR (Intrinsically Disordered Region) was predicted by Mobidb-lite 4.0, please refer to: MobiDB-lite 4.0: faster prediction of intrinsic protein disorder and structural compactness.

Pi-Pi interaction was predicted by PScore, please refer to: Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

PLAAC and PrD. like were both predicted by PLAAC, please refer to: PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

LCR (Low Complexity Region) was predicted by SEG, please refer to: Statistics of local complexity in amino acid sequences and sequence databases.

NCPR (Net Charge Per Residue), FCR (Fraction of Charged Residues) and hydrophobicity were both computated by CIDER, please refer to: CIDER: Resources to Analyze Sequence-Ensemble Relationships of Intrinsically Disordered Proteins.

Polarity was computated by ProtScale, please refer to: ProtScale.

SASA (Solvent-Accessible Surface Area) was computated by BioPython based on the predicted structure, please refer to: Bio.PDB.SASA module.

Protein Structure

Colered by pLDDT:
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

Protein structure was predicted by Chai-1, which also produces predicted local distance difference test (pLDDT) score between 0 and 100.

For pLDDT, please refer to: pLDDT: Understanding local confidence